PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28331.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 528aa MW: 60512.8 Da PI: 7.0793

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.2	1.4e-17	352	398	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++++ +dl+++F++++ dAA +L+v+ ++LKr CR+yGI+RWP k PHT28331.1 352 DSVNYDDLKQHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPLSKR 398 678899*************************************8665 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MRDHAVQCGV RTYLALPVFE PIEKNCVGVI ELVTVWKGGY LTYEVERVLN PLEGVDLKCP 60 KIYLNKGRKV QAGKQNEREE IKTMLKIVRE THKLPFVRVW IPCVNLEMDH NGMYVGCTEH 120 AISAGNEVYF VADEEMDADN HVYDDYYYDD MLCFRDISKL QPLQKDQGVV GKAFSSDKLC 180 YCKNITEFSI IEYPLVHYAR WCGLTTSFAI CLKNRDDAYI LELFLPPDNA DPTILLGSIL 240 STMGQHFRSF KFASGQELGN DSRVQVVKAS SDKNVDYFHI YHLASPFMPE VLQAEEQRNQ 300 LTEENKNHTG KEGRQPPMAQ SDVLSINPHI ISEKQCVSVT HLRKESRTRN KDSVNYDDLK 360 QHFNKNLSDA AESLQVSRST LKRLCRKYGI RRWPLSKRKK NTNSDNQALT ILPKKNKSTT 420 SEITTSHTDH ESSSGNSCFT IKATYGDDMM KFKLYTFSRK DDLDNEVAKR LQLPIGGFRI 480 NYMDEDNDRI WIACDDDLRD CFSNAQSLGK NTIKMLVLPA AINHHLEL

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MRDHAVQCGV RTYLALPVFE PIEKNCVGVI ELVTVWKGGY LTYEVERVLN PLEGVDLKCP  60
KIYLNKGRKV QAGKQNEREE IKTMLKIVRE THKLPFVRVW IPCVNLEMDH NGMYVGCTEH  120
AISAGNEVYF VADEEMDADN HVYDDYYYDD MLCFRDISKL QPLQKDQGVV GKAFSSDKLC  180
YCKNITEFSI IEYPLVHYAR WCGLTTSFAI CLKNRDDAYI LELFLPPDNA DPTILLGSIL  240
STMGQHFRSF KFASGQELGN DSRVQVVKAS SDKNVDYFHI YHLASPFMPE VLQAEEQRNQ  300
LTEENKNHTG KEGRQPPMAQ SDVLSINPHI ISEKQCVSVT HLRKESRTRN KDSVNYDDLK  360
QHFNKNLSDA AESLQVSRST LKRLCRKYGI RRWPLSKRKK NTNSDNQALT ILPKKNKSTT  420
SEITTSHTDH ESSSGNSCFT IKATYGDDMM KFKLYTFSRK DDLDNEVAKR LQLPIGGFRI  480
NYMDEDNDRI WIACDDDLRD CFSNAQSLGK NTIKMLVLPA AINHHLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-64	Nin-like family protein