PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28533.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 237aa    MW: 26931.3 Da    PI: 5.0693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-111964554
         AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                GVr +k +g++ AeI++p +   +k ++lg+f tae+A k ++  ++++e
  PHT28533.1 19 GVRKRK-NGKFCAEIKHPLN---KKIIWLGTFVTAEDASKNYESKKLEFE 64
                9**999.8*********743...5******************99988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MKSYKRISKN TYVRLYPIGV RKRKNGKFCA EIKHPLNKKI IWLGTFVTAE DASKNYESKK  60
LEFEELVMAE RAKNGQISEK SNQESCVTDK FEEKSSISVD ENTNTSNGVE ESDEESMMGT  120
WVKISKNQEV KYSHKLGVPV VDNYGFLLGE FSILDDLRIY MDCGVFVAAY AEILSEGQQV  180
HSCVFDAGSQ RLHYALLLWH HGVENTNEGY TSDNGDPPWP RNSVLQEIDE SAIVILE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.12e-15ERF family protein