PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28560.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 177aa MW: 19457.8 Da PI: 7.2018

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	7e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++el+++++ PHT28560.1 10 PCAACKFLRRKCLPGCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLQKELDAANA 108 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MASSSCYNSP CAACKFLRRK CLPGCIFAPY FPPEEPHKFA NVHKIFGASN VSKLLNELLP 60 HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLQ KELDAANADL MRYASGNDMS 120 SAPLIGPHHQ QEIGSTLHNM ALSRRMGYDH HGGGYFPYSP SSWNDQNPSG GGGGENV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	4e-74	LBD family protein