PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28574.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 427aa MW: 49399.1 Da PI: 6.0022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	173	219	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l PHT28574.1 173 KGQWTIEEDRLLIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 219 799**************************9.***********97 PP
2	Myb_DNA-binding	54.3	3.1e-17	227	267	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ PHT28574.1 227 IWTEEEDRILIEAHGEVGNK-WAEIAKKLP-GRTENSIKNHWN 267 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MELDQSNNQN LSIHQPFFMP NNNILKPEID DDFCIDSKDY YLKDFEHLDL NFSNTTFNNF 60 SQNFMIDDDT NGTTYHDPFD PFSNIEDNFS LLGDFNFCSH ELTPFDQENG ESGGSKVMKN 120 NFHDDEFMKP NLNFVNVPDD QSSCVTGDNN SSSSIKKKLG GRGRPKKSSK SSKGQWTIEE 180 DRLLIHLVEK FGIRKWSQIA QMLKGRIGKQ CRERWHNHLR PDIKKDIWTE EEDRILIEAH 240 GEVGNKWAEI AKKLPGRTEN SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE 300 KGSTKKDTNP NDRVEYTGSV AENRNENLPN RPKRHANIAK VKVSPKLEAI KFCQDNNAGD 360 FDFSEAPEFA LGDNFFDENK SMDAFMEEIN PNVGTSIMPC NYEMPTLMMQ GEVNKEIDLI 420 EMISRVN

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MELDQSNNQN LSIHQPFFMP NNNILKPEID DDFCIDSKDY YLKDFEHLDL NFSNTTFNNF  60
SQNFMIDDDT NGTTYHDPFD PFSNIEDNFS LLGDFNFCSH ELTPFDQENG ESGGSKVMKN  120
NFHDDEFMKP NLNFVNVPDD QSSCVTGDNN SSSSIKKKLG GRGRPKKSSK SSKGQWTIEE  180
DRLLIHLVEK FGIRKWSQIA QMLKGRIGKQ CRERWHNHLR PDIKKDIWTE EEDRILIEAH  240
GEVGNKWAEI AKKLPGRTEN SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE  300
KGSTKKDTNP NDRVEYTGSV AENRNENLPN RPKRHANIAK VKVSPKLEAI KFCQDNNAGD  360
FDFSEAPEFA LGDNFFDENK SMDAFMEEIN PNVGTSIMPC NYEMPTLMMQ GEVNKEIDLI  420
EMISRVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	4e-72	MYB family protein