PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28788.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 246aa    MW: 26472.2 Da    PI: 6.9493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014137159123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F++   L  H r+H
  PHT28788.1 137 HVCSICHKAFPTGQALGGHKRRH 159
                 79*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MALEALKSPM SAPPRYEDDV DDAHNMDSWA KGKRSKRPRV ENPPTEEEYL ALCLIMLARS  60
GTGKETGTGN VTEPGSSGVA VHEEPEKKTA ELPLAPPLMI TIRRRQLPQA AVLAAAEEIS  120
XXXGGNISVL NPSGRSHVCS ICHKAFPTGQ ALGGHKRRHY EGKLGGNNRD NGIGGGGGVH  180
SGSVVTTSDG GASTHTPRDF DLNMPPSPEL QLDLRIDCGM KSQRMIEQEV ESPMPTKKPR  240
LFFSMD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-31C2H2 family protein