PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28881.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17072.5 Da    PI: 9.319
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161665251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ie++   ++t+skR++g++KKA+E S+ ++a+v v+++  +gk + yss
  PHT28881.1 16 LIEDNEAHTTTLSKRKKGLFKKANEYSTITGADVGVVLITASGKSHSYSS 65
                6999*******************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MDKRTGKGRQ KIEMKLIEDN EAHTTTLSKR KKGLFKKANE YSTITGADVG VVLITASGKS  60
HSYSSISIEK ITDKFLELKQ DDRQSDHDDM GKLDVFETFE DLRKEVQALN EKEKERIPDK  120
HRLEQLEAIK LWLDKIGKGK EKVMFYPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-12M-type_MADS family protein