PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28882.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18835.6 Da    PI: 9.8573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.4e-171563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie++  r+vt+skR++g+ KKA+E S+L++a+v v+++  +gk + y
  PHT28882.1 15 KLIEDNKARTVTLSKRKKGLYKKAKEYSTLTGADVGVVLITASGKAHSY 63
                569******************************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MDKRTGKGRQ KIEMKLIEDN KARTVTLSKR KKGLYKKAKE YSTLTGADVG VVLITASGKA  60
HSYGSTSIEK VTDKFLELKQ DDRQSDHDDM GKSDVFETFE DLCKEVQALN EKEKERILRY  120
KIMHLHLEVP PDKHRLEQPE AIKSWLDKIK KGKERSCSSQ ANQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-19M-type_MADS family protein