PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29360.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21341.2 Da    PI: 8.0918
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33e-21249449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs  +t+k+y +
  PHT29360.1  2 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSagKTNKVYSF 49
                79**********************************973368888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MKNESNMQVT FSKRRASLFK KASELCTLCG AEIAIVVFSA GKTNKVYSFG HPSVELLVDT  60
FLARDLPPPN DDDRHNHLIR AHRNTGQRGL NKEVMDMQES LQKEKAIGKS LLESGRGAYD  120
RVCESPIIEG LRLSQLEQLK ESLEGQKRKV EFEAKLQEIG SSPLPFLTFG SALSPTSGDG  180
ASSSHGPNVG APFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-30M-type_MADS family protein