PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29361.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 348aa    MW: 38277.5 Da    PI: 9.9319
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.2e-21142188448
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 
                 +n+s  qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT29361.1 142 KNESSMQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 188
                 8999*********************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MMYESNGFEG AAQRQRHELN NKWGVWIGRL GSSIQNSCHA QLYEEKPRNN TGKKYDRNST  60
RSKGSLSTDR LLDSGKHSDL GKECTSGGMV KQNIGNSNIK ALGAEIKNHN YYFLVSQILS  120
SVNLAMARLS KGRKKVEIVK MKNESSMQVT FSKRRAGLFK KASELCTLCG AEIAIVVFSP  180
GKANKVYSFG HPSVELLVDT FLGRGLPPPN DDDRHNHLIR AHRNTGQRGL NKEVMDMQES  240
LHKEKAIGKS LLESGRGAYD RVCESPIIEG LSLSQLEQLK KALESQKRKV EFEAELQQMG  300
SDAQLPLLTF GSALSPTSGD GASSSHDPML VHPFLIRAGG STSSVVPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-43M-type_MADS family protein