PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29362.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12594.2 Da    PI: 8.2446
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-21249449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+   +k+y +
  PHT29362.1  2 KNESNMQVTFSKRRANLFKKASELCTLCGAEIAIVVFSQgkANKVYSF 49
                79***********************************86225666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    
MKNESNMQVT FSKRRANLFK KASELCTLCG AEIAIVVFSQ GKANKVYSFG HPLVELLVDT  60
FLGRDLPPPN DDDRHNNLIR AHRNTGQRGF NKEVMDMQES REGESTREIP T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29M-type_MADS family protein