PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29365.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23168.4 Da    PI: 9.49
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.7e-211763448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT29365.1 17 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                89***********************************9722455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MPRMSKGRKK VEIVEMKNES NMQVTFSKRR ASLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGYPSVE LLVDTFLGRD LPPINDDDRH NHLIRAHRNT SQRGLNKEVM DMQESLQKEK  120
ARGKSLLESG RGAYDRVCES PIIEGLSLSQ LEQLKESLEA QKRKVEFEAK LQQMGSAPLS  180
FHTFGSALSP TSGDGASSSH GPNVGAPFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-37M-type_MADS family protein