PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29366.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17980.9 Da    PI: 9.6536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49.3e-191651338
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                 +n+sn qvtfskRr g++KKA+EL++LC+ae+a++
  PHT29366.1 16 MKNESNMQVTFSKRRVGLFKKASELCTLCGAEIAIM 51
                58*******************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MARLSKGRKK VEIVKMKNES NMQVTFSKRR VGLFKKASEL CTLCGAEIAI MGLPPLNDDD  60
CHNHLIRAHR NTGQRGLNKE VMDMQESLRK EKAIGKSLLE SGRGAYDRVC ESPIIEGLSL  120
SQLEQLKKAL ESQKRKVEFE AELQQMGSDA PLPFCHLWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27M-type_MADS family protein