PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29368.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21817.4 Da    PI: 10.1088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-204693348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                i+n+sn qvtfskR + ++KKA+EL++LC++e+a+++fs+   +k+y 
  PHT29368.1 46 IKNESNMQVTFSKRGASLFKKASELCTLCGTEIAIVVFSPgkANKVYS 93
                9*************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGISNIKALG VGIKNHIFLV SQILSSVNLA MPRMSKGRKK VEIVEIKNES NMQVTFSKRG  60
ASLFKKASEL CTLCGTEIAI VVFSPGKANK VYSFGHPLME LLVDTFLGRD LPPPNDDDRH  120
NHLIRTHRNT GQRGLNKEVM DMQESLHKEK AIGKSLLESG RGAYDRMCES PIIEGHRLSQ  180
LEQLKEPLEA QKRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-37M-type_MADS family protein