PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29369.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21234.1 Da    PI: 6.2405
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.89.1e-21248448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+sn qvtfskRr+g++K A+EL++LC+ae+a+++fs+   +k+y 
  PHT29369.1  2 KNESNMQVTFSKRRAGLFKQASELCTLCGAEIAIVVFSPgkANKVYS 48
                79***********************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MKNESNMQVT FSKRRAGLFK QASELCTLCG AEIAIVVFSP GKANKVYSFG HPSVELLVDA  60
FLGRDLPLPN DDDRHNHLIR AHLKTGQHGL NKEVMDMQES LQKEKAVGKS LLESGRGAYD  120
RVCESPIIEG LSLSQLEQLK EALEAQKQKV QFEAELQQMG SDAPLPFLTF GSALSPTSGD  180
GASSSHGPNV GAPFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-36M-type_MADS family protein