PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29373.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22957.2 Da    PI: 10.1072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.8e-202069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtfskRr g++KKA EL++L+++e+ +++ s ++++l+++
  PHT29373.1 20 KPIDNQNSRHVTFSKRRSGLFKKATELCILTGVEIVILVQSlKRQRLFTF 69
                78*************************************99567889888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MNVNTNTVKK TQGRRKIAIK PIDNQNSRHV TFSKRRSGLF KKATELCILT GVEIVILVQS  60
LKRQRLFTFG HPSADAVIDR YLTGKSSSSL SSSTTDEFNL QKNNQYFSQV CKDLEAEKKK  120
KENIEEAKMV NIDSNNSDNV GCWWYEPIET KDIDELEQFM VALEKLKKNV TTRADELSLL  180
NGSSSLNLTM KRARFGLRIN F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28M-type_MADS family protein