PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29529.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 195aa MW: 22535.1 Da PI: 9.2323

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.4	7.6e-23	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i ++ rq+ f+kRr+g++KKA ELS+LCd++v v+i+s++g+l+e+ss PHT29529.1 10 PILDNNCRQIAFCKRRKGLIKKARELSILCDVDVGVVIVSNRGRLHEFSS 59 6778889*****************************************96 PP
2	K-box	35.2	5.2e-13	91	169	20	98
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e Lq + R++ + + L++ +L +Le++L++ l + Rs+K++llle++++l ++ek l+eenk L+ ++ PHT29529.1 91 KYSRFMTMGELLQATERQFEEINADGLTVTDLVHLENELQTTLIQTRSRKTHLLLESVKDLHEQEKLLREENKLLEDNI 169 56677777889999999998888899***********************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MGRKKLEIKP ILDNNCRQIA FCKRRKGLIK KARELSILCD VDVGVVIVSN RGRLHEFSST 60 NSMTGILQRY ERHVEAAKEI SAEIQVAELS KYSRFMTMGE LLQATERQFE EINADGLTVT 120 DLVHLENELQ TTLIQTRSRK THLLLESVKD LHEQEKLLRE ENKLLEDNIA GMKKNRKVNE 180 MSHLPPQRVT LNFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	1e-36	MIKC_MADS family protein