PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29530.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 196aa MW: 22531.7 Da PI: 8.7048

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.2	3.9e-22	9	61	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51 krie+k+ rqv fskRr+g++KKA+ LS+LCd++v v+i+s++g+ l+eyss PHT29530.1 9 KRIEDKRCRQVAFSKRRKGLIKKANALSILCDVDVGVVIISNDGTarLHEYSS 61 79*****************************************9544999986 PP
2	K-box	42.5	2.8e-15	98	171	26	99
K-box 26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + e Lq++ R+l + ++L + +L +Le++L+ +l +iRs++++llle+++ l +kek l+eenk L+ +++ PHT29530.1 98 ATRELLQETERQLEKTNADDLAVTDLIHLENELQAALIQIRSRQTNLLLESVKGLHEKEKLLREENKHLEDNIA 171 45689****************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MGRRKLEIKR IEDKRCRQVA FSKRRKGLIK KANALSILCD VDVGVVIISN DGTARLHEYS 60 STNSVTGILQ RYDSHVETEK EISAEIQVTE HSKYSSMATR ELLQETERQL EKTNADDLAV 120 TDLIHLENEL QAALIQIRSR QTNLLLESVK GLHEKEKLLR EENKHLEDNI ATTIKKNRRG 180 NEMSDLQPQR VTLNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65060.1	5e-34	MIKC_MADS family protein