PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29531.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 180aa MW: 20483.7 Da PI: 9.8663

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.6	5.3e-21	25	77	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51 kri++k rqv f+kRr+g++KKA+ LS+LC+++v v+i+s++ g+l+eyss PHT29531.1 25 KRIQDKNCRQVAFCKRRKGLIKKANQLSILCNVDVGVVIISNNgtGRLHEYSS 77 79*************************************972257**96 PP
2	K-box	40.2	1.5e-14	111	179	28	96
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 e Lq+ R+l + + L++ +L +L+++L++sl++iRskK++l+le + +l +kek+l+ee+k L++ PHT29531.1 111 GELLQTAERQLEETNADGLTVTDLVHLQNELQTSLTQIRSKKTQLMLETVTDLLEKEKQLREEKKLLKN 179 57899999********************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
METCGNIGLG LKKKKEMGRR KLEIKRIQDK NCRQVAFCKR RKGLIKKANQ LSILCNVDVG 60 VVIISNNGTG RLHEYSSTNS VTGILQRYES HVQAEKEISG EHSMYSSMKI GELLQTAERQ 120 LEETNADGLT VTDLVHLQNE LQTSLTQIRS KKTQLMLETV TDLLEKEKQL REEKKLLKNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65060.1	6e-38	MIKC_MADS family protein