PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29572.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 415aa MW: 45202.9 Da PI: 5.827

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl PHT29572.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PHT29572.1 67 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF TLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLVKMG 120 IDPVTHKPKN DALLSNDGQS KNAANLSHMA QWESARLEAE ARLARQSKLR SSSFHSSITS 180 QEFTAPSPSS PLSKPVVGPT RCLDVLKAWN GVWTKPMNDV SVANASAGIS VTGLARDLES 240 PTSTLGYFEN AQHISTSGIG GNSTILYEFV GNSSGSSEGG IMNNEESEED WKGFGNSSTG 300 HLPEYNKDGI NENSLSFTSG LQDLTLPMDT TWTAESLRSN TDQISPANFV ETFTDLLLSN 360 SGDGDLSEGG GTESDNGGEG SGSGNASENC EDNKNYWNSI FNLVNNPSPS DSAMF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF TLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLVKMG  120
IDPVTHKPKN DALLSNDGQS KNAANLSHMA QWESARLEAE ARLARQSKLR SSSFHSSITS  180
QEFTAPSPSS PLSKPVVGPT RCLDVLKAWN GVWTKPMNDV SVANASAGIS VTGLARDLES  240
PTSTLGYFEN AQHISTSGIG GNSTILYEFV GNSSGSSEGG IMNNEESEED WKGFGNSSTG  300
HLPEYNKDGI NENSLSFTSG LQDLTLPMDT TWTAESLRSN TDQISPANFV ETFTDLLLSN  360
SGDGDLSEGG GTESDNGGEG SGSGNASENC EDNKNYWNSI FNLVNNPSPS DSAMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-106	MYB family protein