PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29733.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23607.3 Da    PI: 10.1129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221662349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +n+s+ qvtfskRr+g++KKA+EL++LC+ae+a+++fs+  k+y +
  PHT29733.1 16 MQNESKLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPGRKVYSF 62
                5799*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MTRRSKGRQR IDIAKMQNES KLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGRKVY  60
SFGHPSVEFL VDRFLPRNLP PPNNEGCHNH LLMNDRNAGL RELNKKVMDM EEMFRMEKAH  120
GESILDIRRA NVGWWEAPIN ALNLSQLQQL MEVMNFLKQD VEKEAQQLQM VTNVGLPFLT  180
FGSALSPTYG ARACSTHGLN VGATFANRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-47M-type_MADS family protein