PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29739.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21785 Da    PI: 10.4758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.4e-201563248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +ien+sn qvtfsk r g++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT29739.1 15 KIENESNLQVTFSKSRVGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                69*************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MPRRRKGRKR VDLVKIENES NLQVTFSKSR VGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFDHPSVE LLVDRFLGRD LPPPNNEGRH NHLLMNHRNV VVRELNKEVM NMEEILQMEK  120
SRGESILEIT RRANGGWWEF LKKDVEKEAQ QQQMATNVGL PFLTFGSALS PTNGARAISS  180
SHGHNVGAPL ANRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126PRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-41M-type_MADS family protein