PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29740.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21469.4 Da    PI: 7.9655
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-20248448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+ n qvtfskRr+g++KKA+EL++LC+ae+a ++fs+   +k+y 
  PHT29740.1  2 KNECNMQVTFSKRRAGLFKKASELCTLCGAEIATVVFSPgkANKVYS 48
                7999*********************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MKNECNMQVT FSKRRAGLFK KASELCTLCG AEIATVVFSP GKANKVYSFG HPLVELLVDR  60
FLGRDLPPPN DDDRYNHLIR AHRNTGQRGL NKEVMDMQES LQKEKAIGKS LLESGRGAYD  120
RVCESPIIEG LSLSQLEQLK EALEAQKRKV EFEAKLQQMG SDAPLPFLTF GSALSSTSSD  180
GASSSHGPNV GAPFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-37M-type_MADS family protein