PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29742.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 425aa    MW: 48388.5 Da    PI: 10.0276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.2e-22232278349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                  +n+s+ qvtfskRr+g++KKA+EL++LC+ae+a+++fs+  k+y +
  PHT29742.1 232 MQNESKLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPGRKVYSF 278
                 5799*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MSLKHLKKRC RRQTHPFGKR LIALVAVYGL EIHQIDVKIA FLNGELEEEI YMEQPEGCVV  60
SGKENKVCRL LKSLYGLKQA HIQWHAKFDQ TMLANWFKIN ECDKCVYIKD TPNHQVIVFL  120
FVDDMLIISR DISDINATKR MLESKFDMKD LGVADVILGI RIHQTPQGLA LSQSHYIEKV  180
LHKFKYMEFG IAKTPLDVNF ALQKNEVSQI LSDNLAMTRR SKGRQRIDIA KMQNESKLQV  240
TFSKRRAGLF KKASELCTLC GAEIAIVVFS PGRKVYSFGH PSVELLVDRF LGRNLPPPNN  300
AGRHNHLLVD HRNAGLRELN KKVMDMEEIF RMEKARGKSI LYIRRANGGW WEAPINALNL  360
SQLQQLVEAM KLLKQDVEKE AQQLQMVTNV GLPFITFGSA LSLTYGARAC STHGLNVGST  420
FANRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-49M-type_MADS family protein