PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29746.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 347aa MW: 39056.9 Da PI: 9.9447

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.3	6.5e-21	206	253	3	48
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+ +k+y PHT29746.1 206 MKNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSPgkANKVYS 253 58************************************9722456665 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MTVEDLIVRQ CIEEDNKAAD RRSKGNSTIN GAHIVEDDQN NSKKRKKDEQ GSNQPKKKFK 60 GKCFNCGKIG HNFTDCRALK KGKKKDQANM IESNKECDDL CAMFSECNLA RNPREWWMDS 120 GATRHVCAKK ELFSSFALTQ VEEMIYMANS ATAKVKPNIG ISNIKALGVE IKNHNYYFLV 180 SQILSSVNLA MARLSKGRKK VEIVKMKNES NMQVTFSKRR ASLFKKASEL CTLCGAEIAI 240 VVFSPGKANK VYSFGHPSVE LLVDRFLGRD LPPRNVDDRY NHLIRAHRNT GQRGLNKEVM 300 DMQESLQKEK AVGKSLLESG RGAYDRVCES PIIEGLSLSQ LKQLKEA

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MTVEDLIVRQ CIEEDNKAAD RRSKGNSTIN GAHIVEDDQN NSKKRKKDEQ GSNQPKKKFK  60
GKCFNCGKIG HNFTDCRALK KGKKKDQANM IESNKECDDL CAMFSECNLA RNPREWWMDS  120
GATRHVCAKK ELFSSFALTQ VEEMIYMANS ATAKVKPNIG ISNIKALGVE IKNHNYYFLV  180
SQILSSVNLA MARLSKGRKK VEIVKMKNES NMQVTFSKRR ASLFKKASEL CTLCGAEIAI  240
VVFSPGKANK VYSFGHPSVE LLVDRFLGRD LPPRNVDDRY NHLIRAHRNT GQRGLNKEVM  300
DMQESLQKEK AVGKSLLESG RGAYDRVCES PIIEGLSLSQ LKQLKEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	47	KKRKK
2	43	84	KKRKKDEQGSNQPKKKFKGKCFNCGKIGHNFTDCRALKKGKK
3	44	85	KKRKKDEQGSNQPKKKFKGKCFNCGKIGHNFTDCRALKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-39	M-type_MADS family protein