PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29747.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 631aa MW: 72219.2 Da PI: 9.6539

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.3	1.2e-15	489	535	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+s+ qvtf+kR +g++K + L++LC+ae+a+++fs+ k+y + PHT29747.1 489 MQNESKLQVTFCKRHAGLFKTVSGLCTLCGAEIAIVVFSPGRKVYSF 535 5799*****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MTVEDLIVRL RIEDDNKVVK RRSKGNSTIN GAHIVEDDQN NSKKGKKDEQ GSNQPKKKFK 60 GKCFNYGKLI HNSTDCHAPK KGKKKYQENM IESNKECDDL CSMFSECNLA RNPREWWMDF 120 GATCHVYANK ELFSSFASTQ VEEMIYMANS ATAKVEGTGK ICLKMTSGKV LTLNNVLSKR 180 PRDKLSENVH NEENPRRSTR QRTSTSFGSD FVTFLLENEP QIFKEAMSSS DSSFWKKAVN 240 NEIDSILSNH TWELVDLPPR NKPLGSKWIF KRKMKMDGTI DKYKARLVVK GFKQKEGLDY 300 FDIYSPVIRI TSIRRLIALA GVYGLEIHQI DVKTTFLNGE LEEEIYIEQP EGCVVPGKEN 360 KVFRLLKSLY VLKQAPKQWH TKFDQTIDIS DINSTKQMLE RKIDMKDLGV ADVILGIRIH 420 RTPQGLALSQ SNYIEKVLDK FKYMEFGIAK TSLDVNFALQ KNEVSQILSD NLAMTRRSKG 480 RQRIDIAKMQ NESKLQVTFC KRHAGLFKTV SGLCTLCGAE IAIVVFSPGR KVYSFGHPSV 540 ELLVDRFLGR NLPPPNNHLL VNHQNAGLRE LNKKVMDMEE MFRMEKACGE SILDIRRANG 600 GWWEDPINAL NLSQLQQLME AMKFLKQDVE K

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MTVEDLIVRL RIEDDNKVVK RRSKGNSTIN GAHIVEDDQN NSKKGKKDEQ GSNQPKKKFK  60
GKCFNYGKLI HNSTDCHAPK KGKKKYQENM IESNKECDDL CSMFSECNLA RNPREWWMDF  120
GATCHVYANK ELFSSFASTQ VEEMIYMANS ATAKVEGTGK ICLKMTSGKV LTLNNVLSKR  180
PRDKLSENVH NEENPRRSTR QRTSTSFGSD FVTFLLENEP QIFKEAMSSS DSSFWKKAVN  240
NEIDSILSNH TWELVDLPPR NKPLGSKWIF KRKMKMDGTI DKYKARLVVK GFKQKEGLDY  300
FDIYSPVIRI TSIRRLIALA GVYGLEIHQI DVKTTFLNGE LEEEIYIEQP EGCVVPGKEN  360
KVFRLLKSLY VLKQAPKQWH TKFDQTIDIS DINSTKQMLE RKIDMKDLGV ADVILGIRIH  420
RTPQGLALSQ SNYIEKVLDK FKYMEFGIAK TSLDVNFALQ KNEVSQILSD NLAMTRRSKG  480
RQRIDIAKMQ NESKLQVTFC KRHAGLFKTV SGLCTLCGAE IAIVVFSPGR KVYSFGHPSV  540
ELLVDRFLGR NLPPPNNHLL VNHQNAGLRE LNKKVMDMEE MFRMEKACGE SILDIRRANG  600
GWWEDPINAL NLSQLQQLME AMKFLKQDVE K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	84	KKGKKDEQGSNQPKKKFKGKCFNYGKLIHNSTDCHAPKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-40	M-type_MADS family protein