PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29748.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24014.6 Da    PI: 9.9608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-221665350
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50
                 en+sn qvtfskRr+g++KKA+EL++LC+ae+ +++fs+  ++k+y ++
  PHT29748.1 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEITIVVFSPgkDNKVYSFA 65
                69************************************854489999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEITI VVFSPGKDNK  60
VYSFAHPSVE LLVDRFLGRD LPPPNNEGHH NHLLMNHRNV VLRELNKEVM NMEEILQMEK  120
AHGESILEIR RRANGGWWEA PINALNLSQL KQLMEAMEFL KQDVEKEAEQ QQMVTNVGLP  180
FLTFGSALSP TNGARAISSS HGHNVGAPLA NRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126PRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-49M-type_MADS family protein