PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29750.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9230.53 Da    PI: 8.267
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.7e-21249449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                en+sn qvtfskRr+g +KKA+EL++LC+ae+a+++fs+   +k+y +
  PHT29750.1  2 ENESNLQVTFSKRRAGHFKKASELCTLCGAEIAIVVFSPgkANKVYSF 49
                8************************************97224666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    
MENESNLQVT FSKRRAGHFK KASELCTLCG AEIAIVVFSP GKANKVYSFD HPSVELLVDR  60
FLGRDIPPPN NEGRHNHLLM NH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-30M-type_MADS family protein