PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29753.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23951.6 Da    PI: 10.4733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT29753.1 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                69************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDRFLRRD LSPNNEGRHN HLLMNHRNVV LRELNKEVMN MEEILQMEKA  120
HGESILEIRR RANGGWWEAP INALNLSQLK QLMEAMEFLK QDIEKEAEQQ QMVTNVGLPF  180
LTFGSALSPT NGARAISSSH GHNVGAPLAN RA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126PRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-50M-type_MADS family protein