PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29756.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 494aa MW: 56192.3 Da PI: 9.9131

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.6	9.1e-20	301	347	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+s+ qvtfskRr+g++KK +EL++LC+ae+ +++fs+ k+y + PHT29756.1 301 MQNESKLQVTFSKRRAGLFKKVSELCTLCGAEIVIVVFSPGRKVYSF 347 5799*****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MSSSDSSFWK EVVNSDIDSI LNNHTWELVD LPPGNKPLGS KWIFKWKMKT DGTIDKYKAR 60 LVVKGFKQKE GLDYFDIYSS VTRITSIRRL IALAAVYGLE IHQIDVKTTF LNGELEEEIY 120 MEQPEGCVVP GKENKVCRLL KSLYGLKQAP KQWHAKFDQT MLANGFKINE CDKCVSIKDT 180 PNHQVIVCLY VDDMLIISRD ISDINATKRM LERKFDMKDL GVADMILGIR IHRTLQGLAL 240 SQSHYIERVL DKFKYMKFGI AKTPLDVNFA LQKNEVSQIL SDNLAMTRRS KGRQRIDIAK 300 MQNESKLQVT FSKRRAGLFK KVSELCTLCG AEIVIVVFSP GRKVYSFGHP SVELLVDRFL 360 GRNLPPQNNE GRHNHLLVNH RNAGLRELKK KVMDMEEMFR MEKARGESIL DIRRANGGWW 420 EAPINALNLS QLQQLMAAMK FLKQDVEKVA QQLQMVTNVG LPFLTFGSAL SPTYGARACS 480 THGLNVGATF ANRV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MSSSDSSFWK EVVNSDIDSI LNNHTWELVD LPPGNKPLGS KWIFKWKMKT DGTIDKYKAR  60
LVVKGFKQKE GLDYFDIYSS VTRITSIRRL IALAAVYGLE IHQIDVKTTF LNGELEEEIY  120
MEQPEGCVVP GKENKVCRLL KSLYGLKQAP KQWHAKFDQT MLANGFKINE CDKCVSIKDT  180
PNHQVIVCLY VDDMLIISRD ISDINATKRM LERKFDMKDL GVADMILGIR IHRTLQGLAL  240
SQSHYIERVL DKFKYMKFGI AKTPLDVNFA LQKNEVSQIL SDNLAMTRRS KGRQRIDIAK  300
MQNESKLQVT FSKRRAGLFK KVSELCTLCG AEIVIVVFSP GRKVYSFGHP SVELLVDRFL  360
GRNLPPQNNE GRHNHLLVNH RNAGLRELKK KVMDMEEMFR MEKARGESIL DIRRANGGWW  420
EAPINALNLS QLQQLMAAMK FLKQDVEKVA QQLQMVTNVG LPFLTFGSAL SPTYGARACS  480
THGLNVGATF ANRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-46	M-type_MADS family protein