PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29788.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 288aa MW: 32574.6 Da PI: 7.0372

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	117	136	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ PHT29788.1 117 FSCAVCNKTFNRFNNMQMHM 136 89*****************9 PP
2	zf-C2H2	14.2	0.00013	203	225	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PHT29788.1 203 FNCRKCGKNFAVRGDWRTHEKNC 225 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MQSTHNSITY VTSSEFEDEL STVLSLGPPG QINLQKNSTA TNFHDYFSSS SSSSFQFQSY 60 NNNNQEGVTV ALHIDSSSTT SSNNNNPSRN NNSNISLANG QYWIPTPAQI LVGPTQFSCA 120 VCNKTFNRFN NMQMHMWGHG SQYRKGPDSL KGTKQASSSM LRLPCYCCAE GCRNNIDYPR 180 SKPLKDFRTL QTHYKRKHGA KPFNCRKCGK NFAVRGDWRT HEKNCGKVWF CICGSDFKHK 240 RSLKDHVKAF GDGHAPHSEN SYYHHVEGDD DEEEDDDDDE EEHENMGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-110	C2H2 family protein