PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29790.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

RAV

Protein Properties

Length: 399aa MW: 44501.3 Da PI: 9.5162

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.4	8.2e-14	73	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PHT29790.1 73 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 121 89**9888.8*****3.....5***********************98 PP
2	B3	104.3	6.5e-33	214	311	1	94
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ + +++l++ PHT29790.1 214 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTSGDKQLYI 311 89**************************778889*************************************************87666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MEGSSSIDQE STTSDSLSIA PAASSSMVVK QQPSMMTTTK PPESLCRMGS GTSSVIIDGE 60 NGVEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR 120 GRDAVTNFKP LLENQESDDV EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KLFGYTKDGT 180 MAKNKDGLID ISSFFGGGGG SIDKVNNKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF 240 PLQNGNNSKG VLLNFEDLNG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFQ 300 RSTSGDKQLY IDFKARNVAP TNAVVTNQVQ VQVQVPQVQM MRLFGVNICK VPATINNVID 360 NNNNSNNMAN CSGGKRMMEM ELLTFESCRK KQRVIIDAL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MEGSSSIDQE STTSDSLSIA PAASSSMVVK QQPSMMTTTK PPESLCRMGS GTSSVIIDGE  60
NGVEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR  120
GRDAVTNFKP LLENQESDDV EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KLFGYTKDGT  180
MAKNKDGLID ISSFFGGGGG SIDKVNNKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF  240
PLQNGNNSKG VLLNFEDLNG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFQ  300
RSTSGDKQLY IDFKARNVAP TNAVVTNQVQ VQVQVPQVQM MRLFGVNICK VPATINNVID  360
NNNNSNNMAN CSGGKRMMEM ELLTFESCRK KQRVIIDAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-139	RAV family protein