PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29889.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 366aa MW: 41087.7 Da PI: 6.3709

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PHT29889.1 194 YECKTCNRTFPSFQALGGHRASH 216 99**********99999998887 PP
2	zf-C2H2	13.8	0.00017	279	301	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PHT29889.1 279 HECSYCGAEFTSGQALGGHMRRH 301 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MEALEEVVGG SSKDLFHIVK GKRTKRLRLQ SPNIPFSVTS HDSLTAWNNG NDNEACNVTC 60 NVPSSSNNNN NKKTNIEDGS DNRDVVACNN NNNIESSSGN GEDIACNNNI NNNNNEILSS 120 AASSEAFINT FTEEEEETAK CLVLLSKSAD DYHPRNVDFF NDDLRLYPTK FNSKRYIETS 180 TNSIDGTKAG IYVYECKTCN RTFPSFQALG GHRASHKKPK TLNTEYNKKS YFDFSDEDDY 240 QLHSPSTTTT LYNKNKNNNN KNMPNSSNNK YYSSSPRIHE CSYCGAEFTS GQALGGHMRR 300 HRGGANVNLP LYLSNLSPAT SIDHQEFGNN NNNVMKKQRD HELSLDLNLP VQDQEQTQRQ 360 LVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MEALEEVVGG SSKDLFHIVK GKRTKRLRLQ SPNIPFSVTS HDSLTAWNNG NDNEACNVTC  60
NVPSSSNNNN NKKTNIEDGS DNRDVVACNN NNNIESSSGN GEDIACNNNI NNNNNEILSS  120
AASSEAFINT FTEEEEETAK CLVLLSKSAD DYHPRNVDFF NDDLRLYPTK FNSKRYIETS  180
TNSIDGTKAG IYVYECKTCN RTFPSFQALG GHRASHKKPK TLNTEYNKKS YFDFSDEDDY  240
QLHSPSTTTT LYNKNKNNNN KNMPNSSNNK YYSSSPRIHE CSYCGAEFTS GQALGGHMRR  300
HRGGANVNLP LYLSNLSPAT SIDHQEFGNN NNNVMKKQRD HELSLDLNLP VQDQEQTQRQ  360
LVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-36	C2H2 family protein