PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30182.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 345aa MW: 38075.2 Da PI: 6.8243

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.3e-07	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+ ++C+FaHg PHT30182.1 93 FKTKLCCKFRA-GVCPNISNCNFAHG 117 69*******.***********8 PP
2	zf-CCCH	43	7.6e-14	228	253	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PHT30182.1 228 WKTRICNKWETTGYCPFGSKCHFAHG 253 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MDFIGEVSFA GGSDVIGVEN WGHGFTDQEV WATEDDYRAW NSGRSSEIPS NSSQDGRHSQ 60 NQCGNEPPHK KSRNSLGEDS VNNRARAIGK MFFKTKLCCK FRAGVCPNIS NCNFAHGIEE 120 LRKPPPNWQD IVAAHESERG GGMMLEPREE HQIPTASSPD PRSESQRSYK GRHCKKFYTE 180 EGCPYGDTCT YLHDEQSRDR ESVAISVTAT VGGFGNNAAG ANLKPSNWKT RICNKWETTG 240 YCPFGSKCHF AHGAAELHKY GGGLVEIEGT DSLSTPPDLK QGGHPFKTVD STVPSTISTP 300 RADVYHLGPG VQVQRPSGIV QRIIQKWKGP EKISKIYGDW IEDIE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MDFIGEVSFA GGSDVIGVEN WGHGFTDQEV WATEDDYRAW NSGRSSEIPS NSSQDGRHSQ  60
NQCGNEPPHK KSRNSLGEDS VNNRARAIGK MFFKTKLCCK FRAGVCPNIS NCNFAHGIEE  120
LRKPPPNWQD IVAAHESERG GGMMLEPREE HQIPTASSPD PRSESQRSYK GRHCKKFYTE  180
EGCPYGDTCT YLHDEQSRDR ESVAISVTAT VGGFGNNAAG ANLKPSNWKT RICNKWETTG  240
YCPFGSKCHF AHGAAELHKY GGGLVEIEGT DSLSTPPDLK QGGHPFKTVD STVPSTISTP  300
RADVYHLGPG VQVQRPSGIV QRIIQKWKGP EKISKIYGDW IEDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-118	C3H family protein