PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30270.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 595aa MW: 68204.7 Da PI: 6.0915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	334	377	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +L PHT30270.1 334 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 377 589*******************66......************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MELMHLMDRL RPVMGLKSWD YCVLWKLSED QRFLEWICCC CGGADKNMHS CEEELSFPDS 60 STSTCRDVMF QHPRTIACDL LAQLPPSLSL DCGTYAMALL SNQAKWMNFV PFSISNMTNE 120 IMGTRALVPS PLGLLELFST QQLPEDEEVI EFVSAQCNIY VEQQPMTNSS FSDGVEESTS 180 KPFPLEGDDH IKVSQNHYQQ TVSPAATSRG HSDNLSYDFP LKRKHLDTSS MNFLPQLSTY 240 STPEVYNNTG GNMLFDQRTS DVTHFSENRY MSEMDAYLQK QMMRSSSTQS AIDDESVKHD 300 NGRSNSGSDS DQNEEEDDPK YRRRNGKGPQ SKNLMAERKR RKKLNERLYA LRALVPKISK 360 LDRASILGDA IEYVMELEKQ VKDLQLELEE HSDDEGRRNQ DQIHPDVLSH NGTKNEPKSE 420 NGKRSNGNGH RELSTNSNGS TDPFRKIQEV EENEKLQQME PQVEVAQLDG NEFFVKVFRE 480 HKTGGFVRIL EALNSLGLEI TNVNATRHTC LVSNIFKVEK RDNEIVQADH VRHTLLELTR 540 NLSRGWSEMA RASSDNNANG CTEYLHNQHH QHDHHLDNNH HKQANSHRYH RHHHH

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MELMHLMDRL RPVMGLKSWD YCVLWKLSED QRFLEWICCC CGGADKNMHS CEEELSFPDS  60
STSTCRDVMF QHPRTIACDL LAQLPPSLSL DCGTYAMALL SNQAKWMNFV PFSISNMTNE  120
IMGTRALVPS PLGLLELFST QQLPEDEEVI EFVSAQCNIY VEQQPMTNSS FSDGVEESTS  180
KPFPLEGDDH IKVSQNHYQQ TVSPAATSRG HSDNLSYDFP LKRKHLDTSS MNFLPQLSTY  240
STPEVYNNTG GNMLFDQRTS DVTHFSENRY MSEMDAYLQK QMMRSSSTQS AIDDESVKHD  300
NGRSNSGSDS DQNEEEDDPK YRRRNGKGPQ SKNLMAERKR RKKLNERLYA LRALVPKISK  360
LDRASILGDA IEYVMELEKQ VKDLQLELEE HSDDEGRRNQ DQIHPDVLSH NGTKNEPKSE  420
NGKRSNGNGH RELSTNSNGS TDPFRKIQEV EENEKLQQME PQVEVAQLDG NEFFVKVFRE  480
HKTGGFVRIL EALNSLGLEI TNVNATRHTC LVSNIFKVEK RDNEIVQADH VRHTLLELTR  540
NLSRGWSEMA RASSDNNANG CTEYLHNQHH QHDHHLDNNH HKQANSHRYH RHHHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	343	RRRNGKGPQSKNLMAERKRRKK
2	337	344	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-131	bHLH family protein