PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT30676.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 132aa    MW: 15057.7 Da    PI: 8.9591
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT30676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.9e-171452745
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                snr   +s+R++g+lKKA+ELSvLCd+++ + +fs++gk
  PHT30676.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 52
                788889********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MGRAKMKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPS GKPSVYKSDS  60
STFEDMITKI AEVNPEERAK RKMECLEVSA AFLIIGMSCF HSFLHSKFKV LCLMNDLLWI  120
EHLDNKESLQ EV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.26e-27M-type_MADS family protein