PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT31462.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 213aa MW: 24276.9 Da PI: 5.9586

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT31462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	18	62	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT Ed+++ +a ++ + +W +Ia++++ gRt +++ ++ PHT31462.1 18 TWTRFEDKQFEQALVLYSENdveRWQKIANHVP-GRTVEDVMMHYD 62 7******************************.*****99985 PP
2	Myb_DNA-binding	44.4	3.9e-14	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky PHT31462.1 122 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 166 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MIGDAANNST AMIQSNSTWT RFEDKQFEQA LVLYSENDVE RWQKIANHVP GRTVEDVMMH 60 YDTLVHDVFE IDSGRVEPPS YPDDDGGFGG DWDELDGGKL SQISFGGGAS KKQEVERKKG 120 TPWTEEEHRL FLIGLDKYGK GDWRSISRNV VVTRTPTQVA SHAQKYYLRQ QSMKKERKRS 180 SIHDITTAVD TKMVPPQNSL QNQGAYQNFN FPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	4e-71	MYB family protein