PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31530.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24685.2 Da    PI: 8.2114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14.2e-171057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfsk r  ++KKA+E+S+LC++++a+i+fs+  k++ +
  PHT31530.1 10 KIEVKNHLQVTFSKCRSDLFKKASEVSTLCGVKIAIIVFSPARKVFSF 57
                58888899**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MGHQKIKIAK IEVKNHLQVT FSKCRSDLFK KASEVSTLCG VKIAIIVFSP ARKVFSFGHP  60
NNNPIANNSL QLVEAYRNDN VCGLNLQLTQ ILGEVEIEKK RGESLDQMRK TSQSQCWWEA  120
PISQLDLQEL EQLKDSMEAL KKYVTNQASK FMVNEIANSS TYFGDNGNGI FENYDIKPPR  180
TIPSSSDLHN HSLGFVCVSL RPFYWIFIRS LDTNLGPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-43M-type_MADS family protein