PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31531.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25381.6 Da    PI: 7.4356
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.7e-192069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vt+skRr g++KKA+EL++L++ae+ +++ s ++++l+++
  PHT31531.1 20 KPIDNQNSRHVTLSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 69
                68*************************************99567888888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MNVNTNFVKK TQGRRKIAIK PIDNQNSRHV TLSKRRLGLF KKASELCILT GAEIVILVQS  60
LKRQRLFTFG HPSADAVIDR YVTGISSSTL SSSTTDEFNL QQNNQYYSHM CKDLEAEKKK  120
KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LKNLKRNVTT RVDELSMLNG  180
SPSSNSTMKI ARFGAEDQFL NQVAIDYCSS IVPYELNSSG DGQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-27M-type_MADS family protein