PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31602.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25367.6 Da    PI: 6.2874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.3e-202069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++
  PHT31602.1 20 KPIDNQNSRHVTFSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 69
                68*************************************99567888888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MNVNTSVVKK TQGRKKIAIK PIDNQNSRHV TFSKRRLGLF KKASELCILT GAEIVILVQS  60
LKRQRLFTFG HPSADAVIDR YITGISSSSL SSSTTDEFNL QQNNQYYSHM CKDLEAEKKK  120
KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LENLKKNVTI RVDQLSILNG  180
SSSSNSTMKI ERFGAEDQFL NQIAIDYCSS IVPYELNNSG DGQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28M-type_MADS family protein