PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31748.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 487aa    MW: 55606.6 Da    PI: 5.1067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.69e-791074723373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 +lLl  Aea+++++l la+ ++ rl+++ s++ +    p++Rla yft++L  + ++  ++  + l  +++ +++ s++++a+++++e+sP++kf+h+t
  PHT31748.1 107 DLLLMGAEAIEARNLDLASIVVLRLNTILSNQENkensPIERLALYFTQGLLCKTLN--NSSPHELLNQNQYQTEFSSSMTAFQMLQEISPYVKFAHFT 203
                 789999********************996666644566************9877776..23333344444445678999999***************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+++  +++++  +++tg+rL++fA+++++pf f+ ++ +     ++e+++v
  PHT31748.1 204 ANQAILEATQGSQQVHILDFDIMEGIQWPPLMVDLVERGNRNSSLRITALVI-DKTNSFYVKKTGKRLQEFADSINLPFMFDQVLLE-----DFEKIQV 296
                 **************************************************99.67899************************98443.....4577788 PP

        GRAS 197 kp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErel 289
                  + + +l+ n++++  +++++  sl +   ++ + +++lsPk+v +ve+e    ++  s sF+e f+eal++y+++ ds+  +++     + +++E+e+
  PHT31748.1 297 VEgHNNLIANVMIHQIYMPQRGSSLVK---TFFNGLRKLSPKLVALVEEElfnlTKIRSLSFVEFFCEALHHYTTISDSILGGFGGGYkLALRVIEKEF 392
                 887999*******99999988888888...********************7664455788********************6666665538999****** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 l+ +i + + +   ++ er+    kW+e l +  GF+++p+s++++ qa++l++ ++  gy v++e+  l l+Wk+rpL+s+S W
  PHT31748.1 393 LRVRILDSLRQFPCDKLERE----KWSEGLYSlKGFRQIPMSSSNVRQANHLVSLFS-GGYWVQNEQCKLALCWKSRPLTSASIW 472
                 ************99966665....6***997658***********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    
MELENFQPSY INPFLEYNNL DTTFSWKNPS INPQCSIQDF VTVVNDVDIL DYFPKDFDFI  60
DGDVDIPLQN VVHGDTEFLI EGQKSRVCNL HLKFLKDQLM EETGVTDLLL MGAEAIEARN  120
LDLASIVVLR LNTILSNQEN KENSPIERLA LYFTQGLLCK TLNNSSPHEL LNQNQYQTEF  180
SSSMTAFQML QEISPYVKFA HFTANQAILE ATQGSQQVHI LDFDIMEGIQ WPPLMVDLVE  240
RGNRNSSLRI TALVIDKTNS FYVKKTGKRL QEFADSINLP FMFDQVLLED FEKIQVVEGH  300
NNLIANVMIH QIYMPQRGSS LVKTFFNGLR KLSPKLVALV EEELFNLTKI RSLSFVEFFC  360
EALHHYTTIS DSILGGFGGG YKLALRVIEK EFLRVRILDS LRQFPCDKLE REKWSEGLYS  420
LKGFRQIPMS SSNVRQANHL VSLFSGGYWV QNEQCKLALC WKSRPLTSAS IWVPTSPSTS  480
PSSSISF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-48GRAS family protein