PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32361.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 352aa MW: 39454 Da PI: 7.6188

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d++k +G g W+ +++ g++R++k+c++rw++yl PHT32361.1 14 KGAWTPIEDKILIDYIKVHGEGKWRNLPNRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.7	4.2e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PHT32361.1 67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRKPCCSKE GLNKGAWTPI EDKILIDYIK VHGEGKWRNL PNRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRKLQEAK 120 GSGQPNRVTS SYRPRNRSSH AKSANPNPIT QLQKNNQEQT IQQDSNCLLQ TDVGREGSSS 180 SSSTCLVVCN KAIRCTKIFI SPQNTDQSVN EITQIDNNDK AMTEGNATTN IVTSSSSSLS 240 EQQQQPVSES YSPTNLSVEM ENYNFNFMFG LDVDDPFLSE LLSVPDLRDQ ILENSTISST 300 VDAGDEVGDC NISVKKERQR SYFPPSSSQI SIFSEGTQHN DLELWINGFS SC

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRKPCCSKE GLNKGAWTPI EDKILIDYIK VHGEGKWRNL PNRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRKLQEAK  120
GSGQPNRVTS SYRPRNRSSH AKSANPNPIT QLQKNNQEQT IQQDSNCLLQ TDVGREGSSS  180
SSSTCLVVCN KAIRCTKIFI SPQNTDQSVN EITQIDNNDK AMTEGNATTN IVTSSSSSLS  240
EQQQQPVSES YSPTNLSVEM ENYNFNFMFG LDVDDPFLSE LLSVPDLRDQ ILENSTISST  300
VDAGDEVGDC NISVKKERQR SYFPPSSSQI SIFSEGTQHN DLELWINGFS SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-62	MYB family protein