PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT32366.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23790.2 Da    PI: 7.587
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT32366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+ks rq+ f+kRr+g++KKA ELS+LCd++v v+i+s++g+l+e+ss
  PHT32366.1  9 KRIEDKSCRQTAFCKRRKGLMKKARELSILCDVDVGVVIISNRGRLHEFSS 59
                79***********************************************96 PP
2K-box42.92.1e-15811691199
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +a+ +  + ++++     e Lq++ R+l   + ++ ++ +L +Le++L+++l + Rs+K+++lle++++l +ke+ l+eenk L+ +++
  PHT32366.1  81 SAEIQVAESKYSRFMPMGELLQETDRQLEETNADDFTVSDLIHLENELQTALIQTRSRKTHMLLESVKHLHEKENLLREENKLLEDNIA 169
                 5667777888899999999****************************************************************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MGRRKVEIKR IEDKSCRQTA FCKRRKGLMK KARELSILCD VDVGVVIISN RGRLHEFSST  60
NSLTGILQRY ESHVEAEKEI SAEIQVAESK YSRFMPMGEL LQETDRQLEE TNADDFTVSD  120
LIHLENELQT ALIQTRSRKT HMLLESVKHL HEKENLLREE NKLLEDNIAR IKKNGEVNEM  180
STDFTDLPPR HIICRQQRVT LNFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.28e-40MIKC_MADS family protein