PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32370.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 191aa MW: 21970.4 Da PI: 9.8235

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.9	1.7e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv f+kRr+g+lKKA+ELS+LCd++v v+i+s++g+l+e++s PHT32370.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKELSILCDVDVGVVIISNRGRLHEFAS 59 79***********************************************86 PP
2	K-box	39.5	2.4e-14	98	166	29	98
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e Lq++ R+l e+++ + +L +Le++L ++l +iRs+K++l+le+i+ lq+kek l ee+k+L++++ PHT32370.1 98 ELLQETERQLE-ENVDGVTATDLIHLENELLTALVQIRSRKTHLMLESIKGLQEKEKLLLEEKKQLENNM 166 67899988876.******************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKELSILCD VDVGVVIISN RGRLHEFAST 60 NSLTGILQRY ESHAAAEKEI SAEIQDAESK FSSMTTGELL QETERQLEEN VDGVTATDLI 120 HLENELLTAL VQIRSRKTHL MLESIKGLQE KEKLLLEEKK QLENNMARMK KNRRVNEKSD 180 LPQQRVTLNF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65060.1	1e-31	MIKC_MADS family protein