PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32418.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 228aa MW: 24920.9 Da PI: 8.9838

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00015	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF + L H +H PHT32418.1 95 YKCSVCGKSFGSYQALGGHKASH 117 9*********9999998888777 PP
2	zf-C2H2	14.3	0.00012	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H PHT32418.1 147 HECTICHKTFPTGQALGGHKRRH 169 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MALEALNSPS TTTPPSLFQF QHTTTQSYIE SWTKGGKRSK RSRSIMEEQR DQPIITEEEY 60 LAFCLLMLAR SGNNNNNNIT TSSATITTNS TKNLYKCSVC GKSFGSYQAL GGHKASHRKL 120 VLINGDNVSS ITTISATSAN SVSGRAHECT ICHKTFPTGQ ALGGHKRRHY EGKMTSSMDV 180 VGSANNFDLN IPALPESWPG FGSSEDEVES LHPAKKSRQF PSTRLELV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-49	C2H2 family protein