PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32466.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 236aa MW: 26462.9 Da PI: 9.1532

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEdell ++v+++G ++W+ I + ++ gR++k+c++rw + PHT32466.1 11 KGPWKKEEDELLQKLVEEHGAKNWSIIGKSIP-GRSGKSCRLRWCNQ 56 79****************************.*********985 PP
2	Myb_DNA-binding	54.6	2.6e-17	65	107	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T +Ed+++++a++++G++ W+tIar + gRt++++k++w++ PHT32466.1 65 PFTSDEDDKIIKAHAEFGNK-WATIARLLT-GRTDNSIKNHWNST 107 89****************.****9.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MKTVKELIRV KGPWKKEEDE LLQKLVEEHG AKNWSIIGKS IPGRSGKSCR LRWCNQLSPQ 60 VEHRPFTSDE DDKIIKAHAE FGNKWATIAR LLTGRTDNSI KNHWNSTLKR KGLQLSKPQP 120 PLKRSLSTGS GTNSGTPSGS DLSSGFAQPD ISTSLSLSLP GFGSSEDSNT PIIQNCNFAP 180 SSIEKQLFSP EFLRVVQDMI RKEVENYMSQ YEEERVAMYT EAVKNNVINN IEISKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	3e-61	MYB family protein