PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33108.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 470aa    MW: 52557.3 Da    PI: 6.3274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4716.3e-144494671374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA +v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++rs+++l+kal++++ s   +see+ ++k+f+e++P+lk++++++N
  PHT33108.1  49 LIHLLLACAGHVASGSLENANITLDHISQLASPSGDTMQRIASYFNEALADRILRSWPGLFKALRSTKLS--VVSEEILVRKMFFEIFPFLKVAFVVTN 145
                 689*************************************************************999998..6************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn  v+++le+l++e+Lrvk+
  PHT33108.1 146 QAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQFNQ-VVSTLENLDVEKLRVKT 239
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkvvvv 241
                 gEala+++++qlh+ll                                                       ++       + d++L+++++lsPkv+vv
  PHT33108.1 240 GEALAISSIMQLHTLLahdnerksplplkhtngvalpralinqntfgeflekdmangcspsndtasssplCST----GssKMDSFLNALWGLSPKVMVV 334
                 *************************************************************999875443333....2346799*************** PP

        GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                 +eq+++hn++++ler++e+l++y+alfd+le++lpr+s erikvE++llg+ei+++vaceg er+erhe+lekW +r+++aGF++vpls++a+ qa++l
  PHT33108.1 335 TEQDSNHNATTLLERLSESLHFYAALFDCLESTLPRTSLERIKVEKMLLGEEIKSIVACEGIERKERHEKLEKWFQRFDTAGFGNVPLSYYAMLQARRL 433
                 *************************************************************************************************** PP

        GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 l+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr
  PHT33108.1 434 LQSYSCEGYKIKEENGCVVICWQDRALFSVSSWR 467
                 *********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MLQDDGSSSV TSSSPLQVFP VMSLSPGLGF GSSNQWLKEL KSEERGLYLI HLLLACAGHV  60
ASGSLENANI TLDHISQLAS PSGDTMQRIA SYFNEALADR ILRSWPGLFK ALRSTKLSVV  120
SEEILVRKMF FEIFPFLKVA FVVTNQAIIE AMEGEKMVHI VDLNAAEPLQ WRALLQDLSA  180
RPEGPPHLRI TGVHQQKEVL DQMAHVLTQE AEKLDIPFQF NQVVSTLENL DVEKLRVKTG  240
EALAISSIMQ LHTLLAHDNE RKSPLPLKHT NGVALPRALI NQNTFGEFLE KDMANGCSPS  300
NDTASSSPLC STGSSKMDSF LNALWGLSPK VMVVTEQDSN HNATTLLERL SESLHFYAAL  360
FDCLESTLPR TSLERIKVEK MLLGEEIKSI VACEGIERKE RHEKLEKWFQ RFDTAGFGNV  420
PLSYYAMLQA RRLLQSYSCE GYKIKEENGC VVICWQDRAL FSVSSWRCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein