PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33800.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 333aa MW: 35755.4 Da PI: 6.6417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PHT33800.1 149 YECKTCNRTFPSFQALGGHRASH 171 99**********99999998887 PP
2	zf-C2H2	13.5	0.00022	234	256	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PHT33800.1 234 HECSICGSEFSSGQALGGHMRRH 256 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MAITIISSST DVGGSDDGGG VMEVCQNFSD RSSAFRGKRT KRSRPSSPLD TVGTMSITTT 60 SSGGDSDDGG GDLCNSTYSP TTSTTQILIR GTSEEDEDMA NCLILLAKSG SGRKVQAVTD 120 ELKKEKITSR KIAEITTIST TGKAGFYVYE CKTCNRTFPS FQALGGHRAS HKKPKTIVED 180 KKSATATDST AASRDDQHHH QESDDQEQGL LNKISHSLSN QTAVINNISK TKIHECSICG 240 SEFSSGQALG GHMRRHRPPT TTATTTATAT TKIISTNFET ISNVSESSSS HHDEKSTRNI 300 LSLDLNLPAP PEDDHKYEQS IVFSAAPLVD CYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-47	C2H2 family protein