PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33818.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 453aa MW: 49762.1 Da PI: 8.1155

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.6e-16	128	173	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ PHT33818.1 128 RGHWRPAEDAQLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 173 899***************************.*********996 PP
2	Myb_DNA-binding	54.6	2.4e-17	180	223	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PHT33818.1 180 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 223 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MSSTSSSSCS CSPMGGASTS MGMFFADMNS LSINTPKSVD EGKGRKGSWD FQFLNKGGAV 60 FSCCQNLDEV QNSEENNESI DLNASCYNEE KQITLHSTFN SNNSSSGGGG GGNNGKETES 120 GQSKLCARGH WRPAEDAQLK ELVAIYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR 180 RAFSEEEEER LMAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRK 240 MGQFVYRRST LVVEEAHSGK AQAPNISCQN SVNQFGATAN TTSVKINNDG PNGWVVYGPN 300 GSPHMTVSAG EAAAATPSST NNVTLLSPYS PFCAPPFDSL PAGHCGNEMM NILNQQGNKS 360 WDRKMEITHH QHHHPTPPSN SLMMMNSMQQ QQSQYLQFPY VTTSRTQISS SPSAAQAEGL 420 VKEDRRSSSN NNNNSDNSTI APPFIDFLGV GAT

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MSSTSSSSCS CSPMGGASTS MGMFFADMNS LSINTPKSVD EGKGRKGSWD FQFLNKGGAV  60
FSCCQNLDEV QNSEENNESI DLNASCYNEE KQITLHSTFN SNNSSSGGGG GGNNGKETES  120
GQSKLCARGH WRPAEDAQLK ELVAIYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR  180
RAFSEEEEER LMAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRK  240
MGQFVYRRST LVVEEAHSGK AQAPNISCQN SVNQFGATAN TTSVKINNDG PNGWVVYGPN  300
GSPHMTVSAG EAAAATPSST NNVTLLSPYS PFCAPPFDSL PAGHCGNEMM NILNQQGNKS  360
WDRKMEITHH QHHHPTPPSN SLMMMNSMQQ QQSQYLQFPY VTTSRTQISS SPSAAQAEGL  420
VKEDRRSSSN NNNNSDNSTI APPFIDFLGV GAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-75	MYB family protein