PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33859.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 341aa MW: 38918.9 Da PI: 8.5548

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ ++++G g+W++ +++ g+ R++k+c++rw +yl PHT33859.1 14 KGPWTHDEDQKLLSFIEKHGCGSWRSLPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	44.8	2.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia ++ Rt++++k++w++ PHT33859.1 67 RGKFSLQEERTIIHLHALLGNR-WSAIATFLP-SRTDNEIKNYWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MGRSKCCDKE GLKKGPWTHD EDQKLLSFIE KHGCGSWRSL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATFLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKI TNNLNGVASS KYVANLSHMA EWESARLEAE ARLVQKSKDS KILFNNNINH 180 STISQQLPYY QPPCLDILKA WQMSSTKLPT INDISAILLN NSRNNNLESS IPSTLNSSEN 240 LFVNNNVPTT TANVRDDHQN PPNLSTFESC FEDDQLQTDL PSFMQEFSGL FPEYYTQNST 300 NIQVDNFMGS CSGDIEDNKL INWNNFPHYL VNSPIGSPLF F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-93	MYB family protein