PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33937.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14413.8 Da    PI: 10.6619
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.9e-181455243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                + +n+ n   tfskRr g++KKA+ELS+LC++e+a ++ s++
  PHT33937.1 14 KMKNQNNLPATFSKRRDGLFKKASELSTLCGVEIATVVSSPS 55
                56899999******************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MRKSTGRKKI KIEKMKNQNN LPATFSKRRD GLFKKASELS TLCGVEIATV VSSPSKTSVY  60
PIGHPCVLSA VDKFLNPPPD TNSLQPLAKP YQNKDVTKME KLIEAKEKRA LRLQSTNTKG  120
SYEGLNFIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-28M-type_MADS family protein